Detailed information of SNP:
|
SNP ID:
sf1209184306(Gbrowse)
Chromosome: chr12 Position: 9184306 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 63.77% | 36.23% |
| All Indica | 797 | 97.37% | 2.63% |
| All Japonica | 494 | 4.66% | 95.34% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 5.09% | 94.91% |
| Tropical Japonica | 92 | 3.26% | 96.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209184306 | A->C | INTERGENIC | None |