Detailed information of SNP:
|
SNP ID:
sf1209187955(Gbrowse)
Chromosome: chr12 Position: 9187955 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 62.57% | 37.43% |
| All Indica | 794 | 97.10% | 2.90% |
| All Japonica | 494 | 3.24% | 96.76% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 207 | 98.07% | 1.93% |
| Temperate Japonica | 334 | 2.99% | 97.01% |
| Tropical Japonica | 92 | 3.26% | 96.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209187955 | C->T | INTERGENIC | None |