Detailed information of SNP:
|
SNP ID:
sf1209188679(Gbrowse)
Chromosome: chr12 Position: 9188679 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 54.39% | 45.61% |
| All Indica | 798 | 83.21% | 16.79% |
| All Japonica | 493 | 2.84% | 97.16% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 79.20% | 20.80% |
| Indica II | 212 | 83.96% | 16.04% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 332 | 2.11% | 97.89% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209188679 | T->A | INTERGENIC | None |