Detailed information of SNP:
SNP ID:
sf1209209457(Gbrowse)
Chromosome: chr12 Position: 9209457 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 63.21% | 36.79% |
All Indica | 799 | 97.00% | 3.00% |
All Japonica | 497 | 4.02% | 95.98% |
Aus | 67 | 92.54% | 7.46% |
Indica I | 375 | 99.20% | 0.80% |
Indica II | 213 | 92.49% | 7.51% |
Indica Intermediate | 211 | 97.63% | 2.37% |
Temperate Japonica | 335 | 3.28% | 96.72% |
Tropical Japonica | 94 | 6.38% | 93.62% |
Japonica Intermediate | 68 | 4.41% | 95.59% |
Group VI/Aromatic | 14 | 92.86% | 7.14% |
Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1209209457 | T->C | INTERGENIC | None |