Detailed information of SNP:



SNP ID: sf1209209457(Gbrowse)

Chromosome: chr12

Position: 9209457
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 63.21% 36.79%
All Indica799 97.00% 3.00%
All Japonica497 4.02% 95.98%
Aus67 92.54% 7.46%
Indica I375 99.20% 0.80%
Indica II213 92.49% 7.51%
Indica Intermediate211 97.63% 2.37%
Temperate Japonica335 3.28% 96.72%
Tropical Japonica94 6.38% 93.62%
Japonica Intermediate68 4.41% 95.59%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 64.29% 35.71%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1209209457 T->C INTERGENIC None