Detailed information of SNP:
|
SNP ID:
sf1209216333(Gbrowse)
Chromosome: chr12 Position: 9216333 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 95.55% | 4.45% |
| All Indica | 784 | 98.21% | 1.79% |
| All Japonica | 485 | 90.72% | 9.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 99.73% | 0.27% |
| Indica II | 209 | 94.26% | 5.74% |
| Indica Intermediate | 207 | 99.52% | 0.48% |
| Temperate Japonica | 330 | 98.48% | 1.52% |
| Tropical Japonica | 91 | 70.33% | 29.67% |
| Japonica Intermediate | 64 | 79.69% | 20.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209216333 | C->T | LOC_Os12g16140(LOC_Os12g16140.1) | Synonymous |