Detailed information of SNP:
|
SNP ID:
sf1209217035(Gbrowse)
Chromosome: chr12 Position: 9217035 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1370 | 67.23% | 32.77% |
| All Indica | 754 | 51.99% | 48.01% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 347 | 42.65% | 57.35% |
| Indica II | 207 | 56.52% | 43.48% |
| Indica Intermediate | 200 | 63.50% | 36.50% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209217035 | A->G | LOC_Os12g16140(LOC_Os12g16140.1) | Non-Synonymous SNP |