Detailed information of SNP:
|
SNP ID:
sf1209220829(Gbrowse)
Chromosome: chr12 Position: 9220829 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 92.58% | 7.42% |
| All Indica | 770 | 87.92% | 12.08% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 360 | 88.33% | 11.67% |
| Indica II | 207 | 89.37% | 10.63% |
| Indica Intermediate | 203 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209220829 | T->G | LOC_Os12g16150(LOC_Os12g16150.1) | INTRON |