Detailed information of SNP:
|
SNP ID:
sf1209221505(Gbrowse)
Chromosome: chr12 Position: 9221505 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 68.10% | 31.90% |
| All Indica | 775 | 54.06% | 45.94% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 362 | 46.96% | 53.04% |
| Indica II | 209 | 57.89% | 42.11% |
| Indica Intermediate | 204 | 62.75% | 37.25% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209221505 | T->C | LOC_Os12g16150(LOC_Os12g16150.1) | Non-Synonymous SNP |