Detailed information of SNP:
|
SNP ID:
sf1209222161(Gbrowse)
Chromosome: chr12 Position: 9222161 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1331 | 57.78% | 42.22% |
| All Indica | 714 | 36.41% | 63.59% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 341 | 32.84% | 67.16% |
| Indica II | 193 | 33.68% | 66.32% |
| Indica Intermediate | 180 | 46.11% | 53.89% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209222161 | C->T | LOC_Os12g16150(LOC_Os12g16150.1) | Non-Synonymous SNP |