Detailed information of SNP:
SNP ID:
sf1209230744(Gbrowse)
Chromosome: chr12 Position: 9230744 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 64.25% | 35.75% |
All Indica | 799 | 97.25% | 2.75% |
All Japonica | 496 | 6.45% | 93.55% |
Aus | 67 | 95.52% | 4.48% |
Indica I | 375 | 99.20% | 0.80% |
Indica II | 213 | 92.96% | 7.04% |
Indica Intermediate | 211 | 98.10% | 1.90% |
Temperate Japonica | 334 | 7.19% | 92.81% |
Tropical Japonica | 94 | 5.32% | 94.68% |
Japonica Intermediate | 68 | 4.41% | 95.59% |
Group VI/Aromatic | 14 | 92.86% | 7.14% |
Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1209230744 | T->G | INTERGENIC | None |