Detailed information of SNP:
|
SNP ID:
sf1209237159(Gbrowse)
Chromosome: chr12 Position: 9237159 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 60.21% | 39.79% |
| All Indica | 797 | 92.22% | 7.78% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 211 | 88.63% | 11.37% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209237159 | T->C | INTERGENIC | None |