Detailed information of SNP:
|
SNP ID:
sf1209237705(Gbrowse)
Chromosome: chr12 Position: 9237705 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 96.23% | 3.77% |
| All Indica | 792 | 99.37% | 0.63% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 60 | 33.33% | 66.67% |
| Indica I | 368 | 99.18% | 0.82% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209237705 | G->A | INTERGENIC | None |