Detailed information of SNP:
|
SNP ID:
sf1209238227(Gbrowse)
Chromosome: chr12 Position: 9238227 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1340 | 74.78% | 25.22% |
| All Indica | 724 | 55.52% | 44.48% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 344 | 56.98% | 43.02% |
| Indica II | 193 | 57.51% | 42.49% |
| Indica Intermediate | 187 | 50.80% | 49.20% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209238227 | G->A | INTERGENIC | None |