Detailed information of SNP:
|
SNP ID:
sf1209239222(Gbrowse)
Chromosome: chr12 Position: 9239222 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 63.23% | 36.77% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 496 | 3.83% | 96.17% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209239222 | A->T | INTERGENIC | None |