Detailed information of SNP:
|
SNP ID:
sf1209239717(Gbrowse)
Chromosome: chr12 Position: 9239717 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1280 | 92.19% | 7.81% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 365 | 73.42% | 26.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 242 | 61.16% | 38.84% |
| Tropical Japonica | 69 | 100.00% | 0.00% |
| Japonica Intermediate | 54 | 94.44% | 5.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209239717 | G->A | INTERGENIC | None |