Detailed information of SNP:
|
SNP ID:
sf1209242931(Gbrowse)
Chromosome: chr12 Position: 9242931 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 62.46% | 37.54% |
| All Indica | 786 | 96.82% | 3.18% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 369 | 99.19% | 0.81% |
| Indica II | 209 | 91.87% | 8.13% |
| Indica Intermediate | 208 | 97.60% | 2.40% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209242931 | T->C | INTERGENIC | None |