Detailed information of SNP:
|
SNP ID:
sf1209260364(Gbrowse)
Chromosome: chr12 Position: 9260364 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 65.11% | 34.89% |
| All Indica | 798 | 97.24% | 2.76% |
| All Japonica | 494 | 8.30% | 91.70% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 332 | 6.93% | 93.07% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209260364 | A->G | INTERGENIC | None |