Detailed information of SNP:
|
SNP ID:
sf1209260622(Gbrowse)
Chromosome: chr12 Position: 9260622 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 58.14% | 41.86% |
| All Indica | 799 | 88.86% | 11.14% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209260622 | C->T | INTERGENIC | None |