Detailed information of SNP:
|
SNP ID:
sf1209267848(Gbrowse)
Chromosome: chr12 Position: 9267848 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 67.49% | 32.51% |
| All Indica | 797 | 48.43% | 51.57% |
| All Japonica | 496 | 97.18% | 2.82% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 374 | 37.97% | 62.03% |
| Indica II | 213 | 52.58% | 47.42% |
| Indica Intermediate | 210 | 62.86% | 37.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209267848 | G->A | INTERGENIC | None |