Detailed information of SNP:
|
SNP ID:
sf1209269248(Gbrowse)
Chromosome: chr12 Position: 9269248 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 95.15% | 4.85% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 479 | 86.43% | 13.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 327 | 81.65% | 18.35% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 91.80% | 8.20% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209269248 | G->A | INTERGENIC | None |