Detailed information of SNP:
|
SNP ID:
sf1209282578(Gbrowse)
Chromosome: chr12 Position: 9282578 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 97.65% | 2.35% |
| All Indica | 797 | 99.00% | 1.00% |
| All Japonica | 487 | 95.07% | 4.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 331 | 98.79% | 1.21% |
| Tropical Japonica | 91 | 82.42% | 17.58% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209282578 | C->T | LOC_Os12g16230(LOC_Os12g16230.1) | Non-Synonymous SNP |