Detailed information of SNP:
|
SNP ID:
sf1209290137(Gbrowse)
Chromosome: chr12 Position: 9290137 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 65.73% | 34.27% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 10.87% | 89.13% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 10.75% | 89.25% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209290137 | A->G | INTERGENIC | None |