Detailed information of SNP:
|
SNP ID:
sf1209296821(Gbrowse)
Chromosome: chr12 Position: 9296821 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 65.94% | 34.06% |
| All Indica | 799 | 97.12% | 2.88% |
| All Japonica | 496 | 10.48% | 89.52% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 10.48% | 89.52% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209296821 | G->C | LOC_Os12g16260(LOC_Os12g16260.1) | Non-Synonymous SNP |