Detailed information of SNP:
|
SNP ID:
sf1209325083(Gbrowse)
Chromosome: chr12 Position: 9325083 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1364 | 57.84% | 42.16% |
| All Indica | 756 | 88.76% | 11.24% |
| All Japonica | 493 | 5.68% | 94.32% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 341 | 89.74% | 10.26% |
| Indica II | 209 | 84.21% | 15.79% |
| Indica Intermediate | 206 | 91.75% | 8.25% |
| Temperate Japonica | 331 | 3.32% | 96.68% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 10 | 90.00% | 10.00% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209325083 | G->C | LOC_Os12g16310(LOC_Os12g16310.1) | Non-Synonymous SNP |