Detailed information of SNP:
|
SNP ID:
sf1209354148(Gbrowse)
Chromosome: chr12 Position: 9354148 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 95.63% | 4.37% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 22.73% | 77.27% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209354148 | C->T | LOC_Os12g16350(LOC_Os12g16350.14) | INTRON |
| sf1209354148 | C->T | LOC_Os12g16350(LOC_Os12g16350.7) | INTRON |
| sf1209354148 | C->T | LOC_Os12g16350(LOC_Os12g16350.10) | INTRON |
| sf1209354148 | C->T | LOC_Os12g16350(LOC_Os12g16350.8) | INTRON |
| sf1209354148 | C->T | LOC_Os12g16350(LOC_Os12g16350.9) | INTRON |
| sf1209354148 | C->T | LOC_Os12g16350(LOC_Os12g16350.1) | INTRON |
| sf1209354148 | C->T | LOC_Os12g16350(LOC_Os12g16350.5) | INTRON |
| sf1209354148 | C->T | LOC_Os12g16350(LOC_Os12g16350.15) | INTRON |
| sf1209354148 | C->T | LOC_Os12g16350(LOC_Os12g16350.4) | INTRON |
| sf1209354148 | C->T | LOC_Os12g16350(LOC_Os12g16350.11) | INTRON |
| sf1209354148 | C->T | LOC_Os12g16350(LOC_Os12g16350.3) | INTRON |
| sf1209354148 | C->T | LOC_Os12g16350(LOC_Os12g16350.13) | UTR_5_PRIME |