Detailed information of SNP:
|
SNP ID:
sf1209365369(Gbrowse)
Chromosome: chr12 Position: 9365369 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 68.62% | 31.38% |
| All Indica | 795 | 53.46% | 46.54% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 31.18% | 68.82% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 210 | 69.52% | 30.48% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209365369 | C->A | INTERGENIC | None |