Detailed information of SNP:



SNP ID: sf1209368563(Gbrowse)

Chromosome: chr12

Position: 9368563
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1418 70.94% 29.06%
All Indica798 56.89% 43.11%
All Japonica497 91.95% 8.05%
Aus67 95.52% 4.48%
Indica I374 37.17% 62.83%
Indica II213 77.46% 22.54%
Indica Intermediate211 71.09% 28.91%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 76.60% 23.40%
Japonica Intermediate68 76.47% 23.53%
Group VI/Aromatic14 28.57% 71.43%
Intermediate42 64.29% 35.71%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1209368563 A->G INTERGENIC None