Detailed information of SNP:
|
SNP ID:
sf1209368563(Gbrowse)
Chromosome: chr12 Position: 9368563 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 70.94% | 29.06% |
| All Indica | 798 | 56.89% | 43.11% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 37.17% | 62.83% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209368563 | A->G | INTERGENIC | None |