Detailed information of SNP:
|
SNP ID:
sf1209385623(Gbrowse)
Chromosome: chr12 Position: 9385623 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 60.65% | 39.35% |
| All Indica | 762 | 87.27% | 12.73% |
| All Japonica | 494 | 14.78% | 85.22% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 355 | 89.30% | 10.70% |
| Indica II | 205 | 83.90% | 16.10% |
| Indica Intermediate | 202 | 87.13% | 12.87% |
| Temperate Japonica | 334 | 9.28% | 90.72% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 66 | 30.30% | 69.70% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209385623 | A->G | LOC_Os12g16400(LOC_Os12g16400.1) | Synonymous |