Detailed information of SNP:
|
SNP ID:
sf1209385745(Gbrowse)
Chromosome: chr12 Position: 9385745 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 94.27% | 5.73% |
| All Indica | 796 | 91.33% | 8.67% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209385745 | T->C | LOC_Os12g16400(LOC_Os12g16400.1) | Non-Synonymous SNP |