Detailed information of SNP:
|
SNP ID:
sf1209405315(Gbrowse)
Chromosome: chr12 Position: 9405315 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1323 | 85.71% | 14.29% |
| All Indica | 717 | 76.57% | 23.43% |
| All Japonica | 486 | 96.71% | 3.29% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 338 | 74.85% | 25.15% |
| Indica II | 185 | 79.46% | 20.54% |
| Indica Intermediate | 194 | 76.80% | 23.20% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 86.67% | 13.33% |
| Japonica Intermediate | 61 | 95.08% | 4.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209405315 | G->A | LOC_Os12g16430(LOC_Os12g16430.1) | Non-Synonymous SNP |