Detailed information of SNP:
|
SNP ID:
sf1209411430(Gbrowse)
Chromosome: chr12 Position: 9411430 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 55.49% | 44.51% |
| All Indica | 790 | 78.99% | 21.01% |
| All Japonica | 489 | 14.72% | 85.28% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 366 | 78.42% | 21.58% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 329 | 7.90% | 92.10% |
| Tropical Japonica | 92 | 23.91% | 76.09% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209411430 | A->G | INTERGENIC | None |