Detailed information of SNP:
|
SNP ID:
sf1209412514(Gbrowse)
Chromosome: chr12 Position: 9412514 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 55.87% | 44.13% |
| All Indica | 795 | 78.87% | 21.13% |
| All Japonica | 497 | 16.30% | 83.70% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 373 | 78.28% | 21.72% |
| Indica II | 212 | 74.06% | 25.94% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 8.36% | 91.64% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209412514 | T->G | LOC_Os12g16440(LOC_Os12g16440.1) | Non-Synonymous SNP |