Detailed information of SNP:
|
SNP ID:
sf1209417400(Gbrowse)
Chromosome: chr12 Position: 9417400 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 54.91% | 45.09% |
| All Indica | 788 | 36.17% | 63.83% |
| All Japonica | 495 | 89.70% | 10.30% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 366 | 32.51% | 67.49% |
| Indica II | 211 | 52.13% | 47.87% |
| Indica Intermediate | 211 | 26.54% | 73.46% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 92 | 77.17% | 22.83% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209417400 | G->C | LOC_Os12g16450(LOC_Os12g16450.1) | Non-Synonymous SNP |