Detailed information of SNP:
|
SNP ID:
sf1209420785(Gbrowse)
Chromosome: chr12 Position: 9420785 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 53.98% | 46.02% |
| All Indica | 791 | 35.52% | 64.48% |
| All Japonica | 482 | 89.21% | 10.79% |
| Aus | 64 | 18.75% | 81.25% |
| Indica I | 373 | 31.64% | 68.36% |
| Indica II | 211 | 52.13% | 47.87% |
| Indica Intermediate | 207 | 25.60% | 74.40% |
| Temperate Japonica | 324 | 96.30% | 3.70% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 64 | 71.88% | 28.12% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209420785 | A->G | LOC_Os12g16450(LOC_Os12g16450.1) | Non-Synonymous SNP |