Detailed information of SNP:
|
SNP ID:
sf1209423049(Gbrowse)
Chromosome: chr12 Position: 9423049 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1378 | 83.60% | 16.40% |
| All Indica | 796 | 98.62% | 1.38% |
| All Japonica | 460 | 54.35% | 45.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 316 | 54.11% | 45.89% |
| Tropical Japonica | 83 | 48.19% | 51.81% |
| Japonica Intermediate | 61 | 63.93% | 36.07% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209423049 | T->C | LOC_Os12g16460(LOC_Os12g16460.1) | Non-Synonymous SNP |