Detailed information of SNP:
|
SNP ID:
sf1209425749(Gbrowse)
Chromosome: chr12 Position: 9425749 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1338 | 91.03% | 8.97% |
| All Indica | 723 | 83.68% | 16.32% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 345 | 91.30% | 8.70% |
| Indica II | 188 | 86.70% | 13.30% |
| Indica Intermediate | 190 | 66.84% | 33.16% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209425749 | A->G | INTERGENIC | None |