Detailed information of SNP:
|
SNP ID:
sf1209428967(Gbrowse)
Chromosome: chr12 Position: 9428967 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1338 | 95.37% | 4.63% |
| All Indica | 732 | 94.95% | 5.05% |
| All Japonica | 486 | 95.68% | 4.32% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 335 | 93.13% | 6.87% |
| Indica II | 202 | 97.52% | 2.48% |
| Indica Intermediate | 195 | 95.38% | 4.62% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 84.78% | 15.22% |
| Japonica Intermediate | 62 | 90.32% | 9.68% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209428967 | C->T | INTERGENIC | None |