Detailed information of SNP:
|
SNP ID:
sf1209452217(Gbrowse)
Chromosome: chr12 Position: 9452217 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 68.67% | 31.33% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 495 | 16.77% | 83.23% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 10.15% | 89.85% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 66 | 31.82% | 68.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209452217 | C->A | LOC_Os12g16510(LOC_Os12g16510.1) | INTRON |