Detailed information of SNP:
|
SNP ID:
sf1209456837(Gbrowse)
Chromosome: chr12 Position: 9456837 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 78.24% | 21.76% |
| All Indica | 798 | 97.74% | 2.26% |
| All Japonica | 486 | 42.59% | 57.41% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 326 | 40.49% | 59.51% |
| Tropical Japonica | 92 | 40.22% | 59.78% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209456837 | C->T | INTERGENIC | None |