Detailed information of SNP:
|
SNP ID:
sf1209460124(Gbrowse)
Chromosome: chr12 Position: 9460124 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 70.19% | 29.81% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 497 | 21.33% | 78.67% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 13.43% | 86.57% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209460124 | T->C | INTERGENIC | None |