Detailed information of SNP:
|
SNP ID:
sf1209484726(Gbrowse)
Chromosome: chr12 Position: 9484726 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 71.13% | 28.87% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 491 | 23.01% | 76.99% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 14.41% | 85.59% |
| Tropical Japonica | 91 | 35.16% | 64.84% |
| Japonica Intermediate | 67 | 49.25% | 50.75% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209484726 | A->G | INTERGENIC | None |