Detailed information of SNP:
|
SNP ID:
sf1209486789(Gbrowse)
Chromosome: chr12 Position: 9486789 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 77.24% | 22.76% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 465 | 38.28% | 61.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 313 | 36.74% | 63.26% |
| Tropical Japonica | 86 | 32.56% | 67.44% |
| Japonica Intermediate | 66 | 53.03% | 46.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209486789 | C->T | LOC_Os12g16580(LOC_Os12g16580.1) | INTRON |