Detailed information of SNP:
|
SNP ID:
sf1209584154(Gbrowse)
Chromosome: chr12 Position: 9584154 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 67.38% | 32.62% |
| All Indica | 796 | 48.62% | 51.38% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 63 | 93.65% | 6.35% |
| Indica I | 373 | 60.59% | 39.41% |
| Indica II | 212 | 40.09% | 59.91% |
| Indica Intermediate | 211 | 36.02% | 63.98% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209584154 | T->C | INTERGENIC | None |