Detailed information of SNP:
|
SNP ID:
sf1209589350(Gbrowse)
Chromosome: chr12 Position: 9589350 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 67.24% | 32.76% |
| All Indica | 795 | 93.84% | 6.16% |
| All Japonica | 493 | 20.69% | 79.31% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 208 | 97.12% | 2.88% |
| Temperate Japonica | 331 | 11.78% | 88.22% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209589350 | C->T | LOC_Os12g16740(LOC_Os12g16740.1) | Synonymous |