Detailed information of SNP:
|
SNP ID:
sf1209589686(Gbrowse)
Chromosome: chr12 Position: 9589686 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 88.93% | 11.07% |
| All Indica | 763 | 81.00% | 19.00% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 78.27% | 21.73% |
| Indica II | 202 | 82.18% | 17.82% |
| Indica Intermediate | 202 | 84.65% | 15.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209589686 | C->A | LOC_Os12g16740(LOC_Os12g16740.1) | Non-Synonymous SNP |