Detailed information of SNP:
|
SNP ID:
sf1209590869(Gbrowse)
Chromosome: chr12 Position: 9590869 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 59.80% | 40.20% |
| All Indica | 795 | 35.09% | 64.91% |
| All Japonica | 496 | 92.54% | 7.46% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 45.45% | 54.55% |
| Indica II | 211 | 23.70% | 76.30% |
| Indica Intermediate | 210 | 28.10% | 71.90% |
| Temperate Japonica | 334 | 94.91% | 5.09% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209590869 | C->T | INTERGENIC | None |