Detailed information of SNP:
|
SNP ID:
sf1209590877(Gbrowse)
Chromosome: chr12 Position: 9590877 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 81.53% | 18.47% |
| All Indica | 775 | 79.87% | 20.13% |
| All Japonica | 495 | 89.49% | 10.51% |
| Aus | 51 | 47.06% | 52.94% |
| Indica I | 359 | 69.08% | 30.92% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 204 | 88.73% | 11.27% |
| Temperate Japonica | 334 | 96.11% | 3.89% |
| Tropical Japonica | 93 | 75.27% | 24.73% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209590877 | C->T | INTERGENIC | None |