Detailed information of SNP:
|
SNP ID:
sf1209641457(Gbrowse)
Chromosome: chr12 Position: 9641457 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1194 | 78.48% | 21.52% |
| All Indica | 629 | 78.22% | 21.78% |
| All Japonica | 450 | 90.22% | 9.78% |
| Aus | 63 | 15.87% | 84.13% |
| Indica I | 257 | 80.54% | 19.46% |
| Indica II | 192 | 69.27% | 30.73% |
| Indica Intermediate | 180 | 84.44% | 15.56% |
| Temperate Japonica | 323 | 94.74% | 5.26% |
| Tropical Japonica | 73 | 86.30% | 13.70% |
| Japonica Intermediate | 54 | 68.52% | 31.48% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 76.32% | 23.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209641457 | T->C | INTERGENIC | None |