Detailed information of SNP:
|
SNP ID:
sf1209654883(Gbrowse)
Chromosome: chr12 Position: 9654883 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 96.49% | 3.51% |
| All Indica | 777 | 94.21% | 5.79% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 93.15% | 6.85% |
| Indica II | 206 | 96.12% | 3.88% |
| Indica Intermediate | 206 | 94.17% | 5.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209654883 | C->T | LOC_Os12g16840(LOC_Os12g16840.1) | INTRON |
| sf1209654883 | C->T | LOC_Os12g16840(LOC_Os12g16840.1) | SNPs that disrupt splice sites |