Detailed information of SNP:
|
SNP ID:
sf1209655257(Gbrowse)
Chromosome: chr12 Position: 9655257 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1352 | 53.11% | 46.89% |
| All Indica | 739 | 33.56% | 66.44% |
| All Japonica | 494 | 87.04% | 12.96% |
| Aus | 65 | 21.54% | 78.46% |
| Indica I | 345 | 25.22% | 74.78% |
| Indica II | 202 | 47.03% | 52.97% |
| Indica Intermediate | 192 | 34.38% | 65.62% |
| Temperate Japonica | 332 | 93.98% | 6.02% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209655257 | G->A | LOC_Os12g16840(LOC_Os12g16840.1) | Synonymous |